org.embl.ebi.escience.scuflworkers.biomart
Class BiomartXMLHandler

java.lang.Object
  org.embl.ebi.escience.scuflworkers.biomart.BiomartXMLHandler

All Implemented Interfaces:

XMLHandler

public class BiomartXMLHandler
extends java.lang.Object
implements XMLHandler

Utility class for serializing Biomart classes to XML.

Author:

David Withers

Field Summary

static java.lang.String	BIOMART_ELEMENT
static org.jdom.Namespace	NAMESPACE

Constructor Summary

BiomartXMLHandler()

Method Summary

org.jdom.Element	elementForFactory(ProcessorFactory pf) Return the spec element for a given ProcessorFactory.
org.jdom.Element	elementForProcessor(Processor p) Return the spec element, that is to say the processor specific portion of the processor element.
ProcessorFactory	getFactory(org.jdom.Element element) Create a new factory that will produces processors of the supplied spec when it's invoked
Processor	loadProcessorFromXML(org.jdom.Element element, ScuflModel model, java.lang.String name) Create a new processor from the given chunk of XML

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAMESPACE

public static org.jdom.Namespace NAMESPACE

BIOMART_ELEMENT

public static final java.lang.String BIOMART_ELEMENT

See Also:

Constant Field Values

Constructor Detail

BiomartXMLHandler

public BiomartXMLHandler()

Method Detail

elementForProcessor

public org.jdom.Element elementForProcessor(Processor p)

Description copied from interface: XMLHandler

Return the spec element, that is to say the processor specific portion of the processor element. For example, the soaplab implementation of this method returns the element rooted at the 'soaplabwsdl' element.

Specified by:

elementForProcessor in interface XMLHandler

elementForFactory

public org.jdom.Element elementForFactory(ProcessorFactory pf)

Description copied from interface: XMLHandler

Return the spec element for a given ProcessorFactory. In reality each XML handler will be given only a particular subclass of the ProcessorFactory to deal with so you can reasonably cast it to your specific implementation straight off to get factory specific data out.

Specified by:

elementForFactory in interface XMLHandler

getFactory

public ProcessorFactory getFactory(org.jdom.Element element)

Description copied from interface: XMLHandler

Create a new factory that will produces processors of the supplied spec when it's invoked

Specified by:

getFactory in interface XMLHandler

loadProcessorFromXML

public Processor loadProcessorFromXML(org.jdom.Element element,
                                      ScuflModel model,
                                      java.lang.String name)
                               throws ProcessorCreationException,
                                      DuplicateProcessorNameException,
                                      XScuflFormatException

Description copied from interface: XMLHandler

Create a new processor from the given chunk of XML

Specified by:

loadProcessorFromXML in interface XMLHandler

Throws:

ProcessorCreationException

DuplicateProcessorNameException

XScuflFormatException