Uses of Class
org.embl.ebi.escience.scufl.ScuflModel

Packages that use ScuflModel

net.sourceforge.taverna.scuflworkers.bsf	Provides LocalWorkers capable of handling scripts written in any Bean Scripting Framework language.
nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor
nl.utwente.ewi.hmi.taverna.scuflworkers.rshell
org.biomoby.client.taverna.plugin
org.embl.ebi.escience.scufl	Provides the object model for the Simple Conceptual Unified Flow Language (Scufl).
org.embl.ebi.escience.scufl.enactor	Provides a simple facade layer to allow invocation of either an in memory instance of the workflow enactor or a remote and potentially federated cluster of enactor services.
org.embl.ebi.escience.scufl.enactor.event
org.embl.ebi.escience.scufl.enactor.implementation	Implementations of the various enactor proxy interfaces, these classes perform the communication between proxy interface and real enactor instance, wherever that may be.
org.embl.ebi.escience.scufl.parser	Provides functionality to populate ScuflModel instances from textual and XML dialects of the Scufl language.
org.embl.ebi.escience.scufl.shared
org.embl.ebi.escience.scufl.tools	Provides user level command line and graphical tools to manipulate and display scufl model instances.
org.embl.ebi.escience.scufl.view	Provides classes that present a view on a ScuflModel instance.
org.embl.ebi.escience.scuflui	Provides Java Swing components that show or allow manipulation of subsets of the ScuflModel state.
org.embl.ebi.escience.scuflui.actions
org.embl.ebi.escience.scuflui.graph
org.embl.ebi.escience.scuflui.graph.model
org.embl.ebi.escience.scuflui.results
org.embl.ebi.escience.scuflui.shared
org.embl.ebi.escience.scuflui.spi
org.embl.ebi.escience.scuflui.treeview
org.embl.ebi.escience.scuflui.workbench
org.embl.ebi.escience.scuflworkers
org.embl.ebi.escience.scuflworkers.apiconsumer
org.embl.ebi.escience.scuflworkers.beanshell
org.embl.ebi.escience.scuflworkers.biomart
org.embl.ebi.escience.scuflworkers.biomoby
org.embl.ebi.escience.scuflworkers.dependency
org.embl.ebi.escience.scuflworkers.inferno
org.embl.ebi.escience.scuflworkers.java
org.embl.ebi.escience.scuflworkers.notification
org.embl.ebi.escience.scuflworkers.rdfgenerator
org.embl.ebi.escience.scuflworkers.rserv
org.embl.ebi.escience.scuflworkers.soaplab
org.embl.ebi.escience.scuflworkers.stringconstant
org.embl.ebi.escience.scuflworkers.talisman
org.embl.ebi.escience.scuflworkers.web
org.embl.ebi.escience.scuflworkers.workflow
org.embl.ebi.escience.scuflworkers.wsdl
uk.ac.soton.itinnovation.taverna.enactor.broker	Provides classes associated with taking an XScufl workflow definition, converting it to the myGrid enactor conceptual model and submitting it to the core enactor module.

Uses of ScuflModel in net.sourceforge.taverna.scuflworkers.bsf

Methods in net.sourceforge.taverna.scuflworkers.bsf with parameters of type ScuflModel

void	BSFConfigPanel.attachToModel(ScuflModel theModel)
Processor	BSFXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in net.sourceforge.taverna.scuflworkers.bsf with parameters of type ScuflModel

BSFProcessor(ScuflModel model, java.lang.String name, java.lang.String script, java.lang.String[] inputs, java.lang.String[] outputs)
Construct a new processor with the given model and name, delegates to the superclass and sets the script up correctly along with the input and output port name arrays.

Uses of ScuflModel in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor with parameters of type ScuflModel

void	APConfigPanel.attachToModel(ScuflModel theModel)
Processor	APXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name) Method for loading an xml processor from XML

Constructors in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor with parameters of type ScuflModel

APProcessor(ScuflModel model, java.lang.String name)
Constructor of the abstract processor

Uses of ScuflModel in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell with parameters of type ScuflModel

void	RshellConfigPanel.attachToModel(ScuflModel theModel)
Processor	RshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name) Method for loading an xml processor from XML

Constructors in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell with parameters of type ScuflModel

RshellProcessor(ScuflModel model, java.lang.String name)

Uses of ScuflModel in org.biomoby.client.taverna.plugin

Methods in org.biomoby.client.taverna.plugin with parameters of type ScuflModel

java.util.Set<Scavenger>	BiomobyScavengerHelper.getFromModel(ScuflModel model)
java.util.Set<Scavenger>	BiomobyObjectScavengerHelper.getFromModel(ScuflModel model) Deprecated.
Processor	MobyParseDatatypeXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
Processor	BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)
Processor	BiomobyObjectXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)

Constructors in org.biomoby.client.taverna.plugin with parameters of type ScuflModel

BiomobyObjectProcessor(ScuflModel model, java.lang.String processorName, org.biomoby.shared.MobyDataType service, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyObjectProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyObjectProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint, boolean prompt)

BiomobyProcessor(ScuflModel model, java.lang.String processorName, org.biomoby.shared.MobyService service, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

MobyParseDatatypeProcessor(ScuflModel model, java.lang.String workflowName, org.biomoby.shared.MobyDataType datatype, java.lang.String articleName, java.lang.String registryEndpoint)

MobyParseDatatypeProcessor(ScuflModel model, java.lang.String workflowName, java.lang.String datatypeName, java.lang.String articleName, java.lang.String registryEndpoint)

Uses of ScuflModel in org.embl.ebi.escience.scufl

Methods in org.embl.ebi.escience.scufl that return ScuflModel

ScuflModel	ScuflModel.clone()
ScuflModel	ScuflWorkflowProcessor.getInternalModel()
ScuflModel	ScuflWorkflowProcessor.getInternalModelForEditing()
ScuflModel	Processor.getModel() Get the parent model
ScuflModel	IProcessor.getModel() Get the parent model

Constructors in org.embl.ebi.escience.scufl with parameters of type ScuflModel

ConcurrencyConstraint(ScuflModel model, java.lang.String name, Processor controller, Processor target, int targetStateFrom, int targetStateTo, int controllerStateGuard)
Create a new concurrency constraint.

DataConstraint(ScuflModel model, Port source, Port sink)
Create a new data constraint from the source to the sink port.

DataConstraint(ScuflModel model, java.lang.String source_name, java.lang.String sink_name)
Create a new data constraint from two name strings of the form [PROCESSOR]:[PORT] for source and sink.

Processor(ScuflModel model, java.lang.String name)
Construct the processor with the given name and parent, complaining if the name doesn't conform to [a-zA-Z_0-9]

Uses of ScuflModel in org.embl.ebi.escience.scufl.enactor

Methods in org.embl.ebi.escience.scufl.enactor that return ScuflModel

ScuflModel

WorkflowInstance.getWorkflowModel() Get the workflow model (may be offline mode!) for this workflow instance

Methods in org.embl.ebi.escience.scufl.enactor with parameters of type ScuflModel

WorkflowInstance	EnactorProxy.compileWorkflow(ScuflModel workflow, java.util.Map inputs, UserContext user) Submit a workflow to the enactor represented by this proxy.
WorkflowInstance	EnactorProxy.compileWorkflow(ScuflModel workflow, UserContext user) Submit to the enactor represented by this proxy for compilation the workflow submission.

Uses of ScuflModel in org.embl.ebi.escience.scufl.enactor.event

Methods in org.embl.ebi.escience.scufl.enactor.event that return ScuflModel

ScuflModel

WorkflowCreationEvent.getModel() Return a reference to the ScuflModel object used to create this workflow

Uses of ScuflModel in org.embl.ebi.escience.scufl.enactor.implementation

Methods in org.embl.ebi.escience.scufl.enactor.implementation that return ScuflModel

ScuflModel

WorkflowInstanceImpl.getWorkflowModel() Return a reference to the ScuflModel which this workflow was built from

Methods in org.embl.ebi.escience.scufl.enactor.implementation with parameters of type ScuflModel

WorkflowInstance	FreefluoEnactorProxy.compileWorkflow(ScuflModel workflow, java.util.Map input, UserContext user)
WorkflowInstance	FreefluoEnactorProxy.compileWorkflow(ScuflModel workflow, UserContext user)
static WorkflowInstanceImpl	WorkflowInstanceImpl.getInstance(uk.ac.soton.itinnovation.freefluo.main.Engine engine, ScuflModel workflowModel, java.lang.String engineId) Get the workflow as compiled to the given engine with the given engineId.

Uses of ScuflModel in org.embl.ebi.escience.scufl.parser

Methods in org.embl.ebi.escience.scufl.parser with parameters of type ScuflModel

static void	XScuflParser.populate(org.jdom.Document document, ScuflModel model, java.lang.String prefix) Read from the given JDOM Document and populate the given ScuflModel with data from the definition.
static void	XScuflParser.populate(java.io.InputStream is, ScuflModel model, java.lang.String prefix) Read from the given InputStream and populate the given ScuflModel with data from the definition.
static void	XScuflParser.populate(java.lang.String input, ScuflModel model, java.lang.String prefix) Read from the given String containing an XScufl document and populate the given ScuflModel with data from the definition.

Uses of ScuflModel in org.embl.ebi.escience.scufl.shared

Methods in org.embl.ebi.escience.scufl.shared with parameters of type ScuflModel

static javax.swing.JPopupMenu

ScuflContextMenuFactory.getMenuForObject(javax.swing.tree.DefaultMutableTreeNode theNode, java.lang.Object theObject, ScuflModel methodSigModel) Creates a JPopupMenu appropriate to the object supplied.

Uses of ScuflModel in org.embl.ebi.escience.scufl.tools

Constructors in org.embl.ebi.escience.scufl.tools with parameters of type ScuflModel

WorkflowLauncher(ScuflModel model)
Instantiate the WorkflowLauncher with a direct reference to the ScuflModel to be executed.

WorkflowLauncher(ScuflModel model, UserContext userContext)
Instantiate the WorkflowLauncher with a direct reference to the ScuflModel to be executed, together with a UserContext for the user executing this model.

Uses of ScuflModel in org.embl.ebi.escience.scufl.view

Methods in org.embl.ebi.escience.scufl.view that return ScuflModel

ScuflModel

TreeModelView.getModel() Return the workflow this view is bound to

Methods in org.embl.ebi.escience.scufl.view with parameters of type ScuflModel

void	TreeModelView.attachToModel(ScuflModel theModel) Bind to a ScuflModel
static org.jdom.Document	XScuflView.getDocument(ScuflModel model) Get the XML Document for the model.
static java.lang.String	WorkflowSummaryAsHTML.getSummary(ScuflModel model)
static java.lang.String	XScuflView.getXMLText(ScuflModel model) Get the XML representation as String for this model.

Constructors in org.embl.ebi.escience.scufl.view with parameters of type ScuflModel

DotView(ScuflModel model)
Construct the view and attach it to the given model.

XScuflView(ScuflModel model)
Construct the view and bind to the given model.

Uses of ScuflModel in org.embl.ebi.escience.scuflui

Methods in org.embl.ebi.escience.scuflui that return ScuflModel

ScuflModel

ScuflModelTreeTableContrib.getScuflModel()

Methods in org.embl.ebi.escience.scuflui with parameters of type ScuflModel

void	WorkflowInputMapBuilder.attachToModel(ScuflModel model)
void	DotTextArea.attachToModel(ScuflModel model)
void	ScuflSVGDiagram.attachToModel(ScuflModel model)
void	ScuflDiagramPanel.attachToModel(ScuflModel model)
void	AdvancedModelExplorer.attachToModel(ScuflModel theModel)
void	XScuflTextArea.attachToModel(ScuflModel model)
void	ScavengerTreePanel.attachToModel(ScuflModel model)
void	XScuflTree.attachToModel(ScuflModel model)
static boolean	WorkflowInputPanelFactory.checkValidWorkflow(ScuflModel workflow, java.awt.Component parentComponent)
static void	WorkflowInputPanelFactory.executeWorkflow(ScuflModel workflow, java.util.Map<java.lang.String,DataThing> inputs) Immediately execute workflow.
static WorkflowInputPanel	WorkflowInputPanelFactory.invokeWorkflow(ScuflModel workflow) Invoke workflow.
static WorkflowInputPanel	WorkflowInputPanelFactory.invokeWorkflow(ScuflModel workflow, java.awt.Component parentComponent) Invoke workflow.
static WorkflowInputPanel	WorkflowInputPanelFactory.invokeWorkflow(ScuflModel workflow, java.util.Map<java.lang.String,DataThing> inputs) Invoke workflow.
static WorkflowInputPanel	WorkflowInputPanelFactory.invokeWorkflow(ScuflModel workflow, java.util.Map<java.lang.String,DataThing> inputs, java.awt.Component parentComponent) Invoke workflow.

Constructors in org.embl.ebi.escience.scuflui with parameters of type ScuflModel

EnactorInvocation(EnactorProxy enactor, ScuflModel model, java.util.Map inputDataThings)
Create a new enactor run panel using the new plugable enactor proxy.

EnactorStatusTableModel(ScuflModel scufl)

WorkflowInputPanel(ScuflModel model)

Uses of ScuflModel in org.embl.ebi.escience.scuflui.actions

Methods in org.embl.ebi.escience.scuflui.actions with parameters of type ScuflModel

java.util.List<ScuflModelActionSPI>	ScuflModelActionRegistry.getScuflModelActions(ScuflModel model) Finds the actions, and initialises them with the model provided
static java.io.File	SaveWorkflowAction.saveDialogue(java.awt.Component parentComponent, ScuflModel model, java.lang.String extension, java.lang.String windowTitle) Pop up a save dialogue relating to the given workflow.
static boolean	SaveWorkflowAction.saveToFile(java.awt.Component parentComponent, ScuflModel model) Prompt for a file name, and then save the given workflow to that file.
static void	SaveWorkflowAction.saveToFile(ScuflModel model, java.io.File file) Save the given workflow to the given file.
void	ScuflModelActionSPI.setModel(ScuflModel model)

Constructors in org.embl.ebi.escience.scuflui.actions with parameters of type ScuflModel

AddDataConstraintAction(ScuflModel model, Port start, Port end)

AddInputAction(ScuflModel model)

AddOutputAction(ScuflModel model)

EditMetadataAction(ScuflModel model, Port modelObject)

ModelObjectAction(ScuflModel model, java.lang.Object modelObject)
Create an action for the given modelObject.

OfflineToggleModel(ScuflModel model)

RemoveAction(ScuflModel model, java.lang.Object modelObject)

RenameAction(ScuflModel model, java.lang.Object modelObject)

ResetAction(ScuflModel model, java.awt.Component parentComponnt)

SetDefaultValueAction(ScuflModel model, InputPort modelObject)

Uses of ScuflModel in org.embl.ebi.escience.scuflui.graph

Methods in org.embl.ebi.escience.scuflui.graph with parameters of type ScuflModel

void	WorkflowEditor.attachToModel(ScuflModel model)

Uses of ScuflModel in org.embl.ebi.escience.scuflui.graph.model

Methods in org.embl.ebi.escience.scuflui.graph.model that return ScuflModel

ScuflModel

ScuflGraphModel.getModel()

Methods in org.embl.ebi.escience.scuflui.graph.model with parameters of type ScuflModel

void	ScuflGraphModel.attachToModel(ScuflModel model)

Uses of ScuflModel in org.embl.ebi.escience.scuflui.results

Constructors in org.embl.ebi.escience.scuflui.results with parameters of type ScuflModel

ResultTable(ScuflModel model, WorkflowInstance workflowInstance)

ResultTableModel(ScuflModel model, WorkflowInstance instance)

ResultTablePanel(ScuflModel model, WorkflowInstance workflowInstance)

Uses of ScuflModel in org.embl.ebi.escience.scuflui.shared

Methods in org.embl.ebi.escience.scuflui.shared that return types with arguments of type ScuflModel

java.util.Set<ScuflModel>

ScuflModelSet.getModels()

Methods in org.embl.ebi.escience.scuflui.shared with parameters of type ScuflModel

void	ScuflModelSet.addModel(ScuflModel model)
static void	UIUtils.createFrame(ScuflModel targetModel, UIComponentSPI targetComponent, int posX, int posY, int sizeX, int sizeY) Create a top level window using the configured default frame creator.
void	UIUtils.FrameCreator.createFrame(ScuflModel targetModel, UIComponentSPI targetComponent, int posX, int posY, int sizeX, int sizeY)
boolean	WorkflowChanges.hasChanged(ScuflModel workflow) Return true if workflow has been changed since creation or last save, otherwise false.
java.io.File	WorkflowChanges.lastFilename(ScuflModel workflow) Find the latest filename to which the workflow was saved, as notified with syncedWithFile().
void	ScuflModelSet.ScuflModelSetListener.modelAdded(ScuflModel model)
void	ScuflModelSet.ScuflModelSetListener.modelRemoved(ScuflModel model)
void	ScuflModelSet.removeModel(ScuflModel model)
void	WorkflowChanges.synced(ScuflModel workflow) Mark the workflow as synchronized with source.
void	WorkflowChanges.syncedWithFile(ScuflModel workflow, java.io.File file) Mark the workflow as synchronized by saving to given file.

Uses of ScuflModel in org.embl.ebi.escience.scuflui.spi

Methods in org.embl.ebi.escience.scuflui.spi with parameters of type ScuflModel

void	WorkflowModelViewSPI.attachToModel(ScuflModel model) Directs the implementing component to bind to the specified ScuflModel instance, refresh its internal state from the model and commence listening to events, maintaining its state as these events dictate.

Uses of ScuflModel in org.embl.ebi.escience.scuflui.treeview

Methods in org.embl.ebi.escience.scuflui.treeview with parameters of type ScuflModel

void	ScuflModelTreeTable.attachToModel(ScuflModel theModel) Bind this view onto a ScuflModel instance, this registers the view to receive events and thus keep up to date.
void	ScuflModelExplorer.attachToModel(ScuflModel theModel) Bind this view onto a ScuflModel instance, this registers the view to receive events and thus keep up to date.

Uses of ScuflModel in org.embl.ebi.escience.scuflui.workbench

Methods in org.embl.ebi.escience.scuflui.workbench with parameters of type ScuflModel

void	ScavengerHelperThreadPool.addScavengerHelperForModel(ScavengerHelper helper, ScuflModel theModel) Scavengers over a ScuflModel for processors that are understood by the scavenger helper.
void	DefaultScavengerTree.attachToModel(ScuflModel theModel) Listen for model bind requests to set the internal ScuflModel field
boolean	Workbench.closeWorkflow(ScuflModel model) Close the given workflow.
boolean	Workbench.safeToClose(ScuflModel model) Check if it's safe to close the given model.

Constructors in org.embl.ebi.escience.scuflui.workbench with parameters of type ScuflModel

NestedWorkflowSwitcher(ScuflModel model)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers

Methods in org.embl.ebi.escience.scuflworkers with parameters of type ScuflModel

Processor	ProcessorFactory.createProcessor(java.lang.String name, ScuflModel model) Instantiate a new processor with the supplied name and bind it to the specified model.
java.util.Set<Scavenger>	ScavengerHelper.getFromModel(ScuflModel model) Extracts the scavengers from a ScuflModel for adding to the service panel
static Processor	ProcessorHelper.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name) Spit back a processor given a chunk of xml, the element passed in being the 'processor' tag return null if we can't handle it
Processor	XMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name) Create a new processor from the given chunk of XML

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.apiconsumer

Methods in org.embl.ebi.escience.scuflworkers.apiconsumer with parameters of type ScuflModel

java.util.Set<Scavenger>	APIConsumerScavengerHelper.getFromModel(ScuflModel model)
Processor	APIConsumerXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.apiconsumer with parameters of type ScuflModel

APIConsumerProcessor(ScuflModel model, java.lang.String name, APIConsumerDefinition definition)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.beanshell

Methods in org.embl.ebi.escience.scuflworkers.beanshell with parameters of type ScuflModel

Processor

BeanshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.beanshell with parameters of type ScuflModel

BeanshellProcessor(ScuflModel model, java.lang.String name, java.lang.String script, java.lang.String[] inputs, java.lang.String[] outputs)
Construct a new processor with the given model and name, delegates to the superclass and sets the script up correctly along with the input and output port name arrays.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.biomart

Methods in org.embl.ebi.escience.scuflworkers.biomart with parameters of type ScuflModel

java.util.Set<Scavenger>	BiomartScavengerHelper.getFromModel(ScuflModel model)
Processor	BiomartXMLHandler.loadProcessorFromXML(org.jdom.Element element, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.biomart with parameters of type ScuflModel

BiomartProcessor(ScuflModel model, java.lang.String processorName, org.biomart.martservice.MartQuery query)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.biomoby

Methods in org.embl.ebi.escience.scuflworkers.biomoby with parameters of type ScuflModel

java.util.Set<Scavenger>	BiomobyScavengerHelper.getFromModel(ScuflModel model)
Processor	BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)

Constructors in org.embl.ebi.escience.scuflworkers.biomoby with parameters of type ScuflModel

BiomobyProcessor(ScuflModel model, java.lang.String processorName, org.biomoby.shared.MobyService service, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

BiomobyProcessor(ScuflModel model, java.lang.String processorName, java.lang.String authorityName, java.lang.String serviceName, java.lang.String mobyEndpoint)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.dependency

Constructors in org.embl.ebi.escience.scuflworkers.dependency with parameters of type ScuflModel

DependencyProcessor(ScuflModel model, java.lang.String name)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.inferno

Methods in org.embl.ebi.escience.scuflworkers.inferno with parameters of type ScuflModel

java.util.Set<Scavenger>	InfernoScavengerHelper.getFromModel(ScuflModel model)
Processor	InfernoXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.inferno with parameters of type ScuflModel

InfernoProcessor(ScuflModel theModel, java.lang.String processorName, java.lang.String host, int port, java.lang.String service)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.java

Methods in org.embl.ebi.escience.scuflworkers.java with parameters of type ScuflModel

Processor

LocalServiceXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.java with parameters of type ScuflModel

LocalServiceProcessor(ScuflModel model, java.lang.String name, LocalWorker worker)

LocalServiceProcessor(ScuflModel model, java.lang.String name, java.lang.String workerClassName)

LocalServiceProcessor(ScuflModel model, java.lang.String name, java.lang.String workerClassName, org.jdom.Element additionalXML)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.notification

Methods in org.embl.ebi.escience.scuflworkers.notification with parameters of type ScuflModel

Processor

NotificationXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.notification with parameters of type ScuflModel

NotificationProcessor(ScuflModel model, java.lang.String name)

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.rdfgenerator

Methods in org.embl.ebi.escience.scuflworkers.rdfgenerator with parameters of type ScuflModel

java.util.Set<Scavenger>	RDFGeneratorScavengerHelper.getFromModel(ScuflModel model)
Processor	RDFGeneratorXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.rdfgenerator with parameters of type ScuflModel

RDFGeneratorProcessor(ScuflModel model, java.lang.String name)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.rserv

Methods in org.embl.ebi.escience.scuflworkers.rserv with parameters of type ScuflModel

Processor

RservXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.rserv with parameters of type ScuflModel

RservProcessor(ScuflModel model, java.lang.String name)

RservProcessor(ScuflModel model, java.lang.String name, java.lang.String script, java.lang.String[] inputs)
Construct a new processor with the given model and name, delegates to the superclass and sets the script up correctly along with the input and output port name arrays.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.soaplab

Methods in org.embl.ebi.escience.scuflworkers.soaplab with parameters of type ScuflModel

java.util.Set<Scavenger>	SoaplabScavengerHelper.getFromModel(ScuflModel model)
Processor	SoaplabXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.soaplab with parameters of type ScuflModel

SoaplabProcessor(ScuflModel model, java.lang.String name, java.lang.String endpoint)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.stringconstant

Methods in org.embl.ebi.escience.scuflworkers.stringconstant with parameters of type ScuflModel

Processor

StringConstantXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.stringconstant with parameters of type ScuflModel

StringConstantProcessor(ScuflModel model, java.lang.String name, java.lang.String value)
Construct a new processor with the given model and name, delegates to the superclass.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.talisman

Methods in org.embl.ebi.escience.scuflworkers.talisman with parameters of type ScuflModel

java.util.Set<Scavenger>	TalismanScavengerHelper.getFromModel(ScuflModel model)
Processor	TalismanXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.talisman with parameters of type ScuflModel

TalismanProcessor(ScuflModel model, java.lang.String name, java.lang.String tscript)
Construct a new processor from the supplied Talisman script document.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.web

Methods in org.embl.ebi.escience.scuflworkers.web with parameters of type ScuflModel

java.util.Set<Scavenger>

WebScavengerHelperImpl.getFromModel(ScuflModel model) Currently doesn't attempt to extract scavengers from the model, so always returns an empty Set.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.workflow

Methods in org.embl.ebi.escience.scuflworkers.workflow that return ScuflModel

ScuflModel	WorkflowProcessor.getInternalModel()
ScuflModel	WorkflowProcessor.getInternalModelForEditing() Returns a ScuflModel that is being listened to by the processor So that any internal changes are automatically reflected in the processor The client is responsible for calling ScuflModel.removeListeners once the model is finished with.

Methods in org.embl.ebi.escience.scuflworkers.workflow with parameters of type ScuflModel

java.util.Set<Scavenger>	WorkflowScavengerHelper.getFromModel(ScuflModel model) WorkflowScavengers are not extracted from the model, so this always returns an empty Set
Processor	WorkflowXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.workflow with parameters of type ScuflModel

WorkflowProcessor(ScuflModel model, java.lang.String name)
Construct a new processor with a blank internal workflow

WorkflowProcessor(ScuflModel model, java.lang.String name, org.jdom.Element scuflElement)
Construct a new processor from the supplied JDOM element, this element being the 'scufl' top level workflow element from an inline nested workflow declaration

WorkflowProcessor(ScuflModel model, java.lang.String name, java.lang.String definitionURL)
Construct a new processor with the given model to bind to, name and URL of a workflow description to contain.

Uses of ScuflModel in org.embl.ebi.escience.scuflworkers.wsdl

Methods in org.embl.ebi.escience.scuflworkers.wsdl with parameters of type ScuflModel

java.util.Set<Scavenger>	WSDLScavengerHelper.getFromModel(ScuflModel model)
Processor	WSDLXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)

Constructors in org.embl.ebi.escience.scuflworkers.wsdl with parameters of type ScuflModel

WSDLBasedProcessor(ScuflModel model, java.lang.String procName, java.lang.String wsdlLocation, java.lang.String operationName)

WSDLBasedProcessor(ScuflModel model, java.lang.String procName, java.lang.String wsdlLocation, java.lang.String operationName, javax.xml.namespace.QName portTypeName)
Construct a new processor from the given WSDL definition and operation name, delegates to superclass then instantiates ports based on WSDL inspection.

Uses of ScuflModel in uk.ac.soton.itinnovation.taverna.enactor.broker

Methods in uk.ac.soton.itinnovation.taverna.enactor.broker that return ScuflModel

ScuflModel

TavernaBinaryWorkflowSubmission.getScuflModel() Retrieve the scuflModel for the submission

Constructors in uk.ac.soton.itinnovation.taverna.enactor.broker with parameters of type ScuflModel

TavernaBinaryWorkflowSubmission(ScuflModel scuflModel, java.util.Map inputData, java.lang.String userID, java.lang.String userNamespaceCxt)
Constructor used when no email notification is necessary.