All Classes
AboutBox
AbstractArtifactFilter
AbstractBufferedImageOp
AbstractCellEditor
AbstractConfiguration
AbstractConfiguration
AbstractDummySPI
AbstractEFetchWorker
AbstractNCBIWorker
AbstractPerspective
AbstractProcessorAction
AbstractPropThreadTest
AbstractRenderer
AbstractRenderer.ByJavaClass
AbstractRenderer.ByMimeType
AbstractRenderer.ByPattern
AbstractRepository
AbstractStreamProcessor
AbstractStreamTransmitter
AbstractTreeTableModel
AddDataConstraintAction
AddInputAction
AddNestedWorkflowAction
AddOutputAction
AddParserAction
AddPluginSiteFrame
AddPluginSiteFrame
AdvancedModelExplorer
AdvancedModelExplorerFactory
AggregatingClassLoader
AlternateProcessor
AlternateProcessScheduled
AnnotationTemplate
APConfigPanel
APEditor
APIConsumerDefinition
APIConsumerEditor
APIConsumerProcessor
APIConsumerProcessorFactory
APIConsumerProcessorInfoBean
APIConsumerScavenger
APIConsumerScavengerHelper
APIConsumerTask
APIConsumerXMLHandler
Application
Application.Factory
ApplicationConfig
ApplicationImpl
ApplicationRuntime
ApplicationUserHome
APProcessor
APProcessorFactory
APProcessorInfoBean
APScavenger
APTask
APXMLHandler
Artifact
Artifact
Artifact.Factory
ArtifactClassLoaderTest
ArtifactDownloadDialog
ArtifactFilter
ArtifactFilterListener
ArtifactImpl
ArtifactImpl
ArtifactImplTest
ArtifactNotFoundException
ArtifactStateException
ArtifactStatus
AskWorker
AssigningServiceClient
AWTComponentRenderer
BaclavaDataService
BaclavaDataServiceFactory
BaclavaIterator
BaclavaIteratorNode
Base64
Base64
Base64.InputStream
Base64.InputStream
Base64.OutputStream
Base64.OutputStream
BasicArtifact
BasicArtifactTest
Beanable
BeanableFactory
BeanableFactoryRegistry
BeanSerialiser
BeanshellConfigPanel
BeanshellEditor
BeanshellProcessor
BeanshellProcessorFactory
BeanshellProcessorInfoBean
BeanshellScavenger
BeanshellTask
BeanshellXMLHandler
BiomartConfigPanel
BiomartEditor
BiomartProcessor
BiomartProcessorFactory
BiomartProcessorInfoBean
BiomartScavenger
BiomartScavengerHelper
BiomartTask
BiomartXMLHandler
BiomobyAction
BiomobyObjectAction
BiomobyObjectProcessor
BiomobyObjectProcessorFactory
BiomobyObjectProcessorInfoBean
BioMobyObjectProcessorTest
BiomobyObjectScavenger
BiomobyObjectScavengerHelper
BiomobyObjectTask
BiomobyObjectTaskTest
BioMobyObjectTreeCustomRenderer
BiomobyObjectXMLHandler
BiomobyParserProcessorTest
BiomobyProcessor
BiomobyProcessor
BiomobyProcessorFactory
BiomobyProcessorFactory
BiomobyProcessorInfoBean
BiomobyProcessorTest
BioMobyProcessorTest
BiomobyScavenger
BiomobyScavenger
BiomobyScavengerAction
BiomobyScavengerActionDialog
BiomobyScavengerDialog
BiomobyScavengerHelper
BiomobyScavengerHelper
BiomobyScavengerWorker
BioMobyServiceTreeCustomRenderer
BiomobyTask
BiomobyTask
BiomobyTaskTest
BiomobyWidgetAction
BiomobyXMLHandler
BiomobyXMLHandler
BlankScavengerTreePanel
BlastParserWorker
BlastParserWorkerTest
BlurredGlassPane
Bootstrap
Bootstrap
BootstrapClassLoader
BootstrapClassLoader
BootstrapTest
BoundingBox
BoxBlurFilter
BSFConfigPanel
BSFEditor
BSFProcessor
BSFProcessorFactory
BSFProcessorInfoBean
BSFScavenger
BSFTask
BSFXMLHandler
ByteArrayToString
ByteArrayToStringTest
BytesSelection
CacheImpl
CArrowImage
CArrowImage
ChooseWorker
ClassLocation
CollectionAsTable
CollectionConstructionEvent
Compatibility
Compatibility.Factory
CompatibilityImpl
ConcatenateFileListWorker
ConcatenateFileListWorkerTest
ConcurrencyConstraint
ConcurrencyConstraintCreationException
ConfigureMobyServiceAction
ConsoleLog
ConstructingIterator
CopyOfBiomobyTask
CreateMobyCollection
CreateMobyData
CreateMobyData
CreateMobySimple
CrossNode
CTransferableTreePath
CTransferableTreePath
CustomPartitionAlgorithm
CustomPerspective
CustomPerspectiveFactory
DataConstraint
DataConstraintCreationException
DataMismatchError
DataRangeColumnTask
DataRangeColumnTaskTest
DataRangeTask
DataRangeTaskTest
DataThing
DataThingAdapter
DataThingFactory
DataThingFactoryTest
DataThingTreeFactory
DataThingTreeNode
DataThingTreeNodeRenderer
DataThingTreeTransferHandler
DataThingViewer
DataThingXMLFactory
DecodeBase64
DefaultScavengerTree
DelimitedFileReader
DelimitedFileReaderTest
DependenciesPanel
Dependency
Dependency.Factory
DependencyImpl
DependencyProcessor
DependencyProcessor.ClassLoaderSharing
DependencyXMLHandler
DescribedPlugin
DescribedPlugin.Factory
DescribedPluginImpl
DesignPerspective
DotNode
DotTextArea
DotTextAreaFactory
DotView
DotViewSettings
DotViewTest
DownloadStatus
DownloadStatusImpl
DummyRepository
DummySPI
DuplicateConcurrencyConstraintNameException
DuplicateLSIDException
DuplicatePortNameException
DuplicateProcessorNameException
EchoList
EclipseRepository
EditMetadataAction
EFetchWorker
EMBLParserWorker
EMBLParserWorkerTest
EmitLotsOfStrings
EnactorEventMonitor
EnactorEventMonitorFactory
EnactorInvocation
EnactorProxy
EnactorStatusTableModel
EnactorWorkflowTask
EnactPerspective
EncodeBase64
EntrezGeneWorker
EntrezProteinWorker
EnvVariableWorker
EnvVariableWorkerTest
ExcelFileReader
ExcelFileReaderTest
ExtendedBSFDeclaredBean
ExtendedBSFManager
ExtendedJTree
ExtensionFileFilter
ExtensionFileFilter
ExtractImageLinks
ExtractMobyData
ExtractMobyData
FacetFinderRegistry
FacetFinderSPI
FacetFinderSPI.ColumnID
FacetsTable
FactorySpecFragment
FailIfFalse
FailIfFalseTest
FailIfTrue
FailIfTrueTest
FastaWorker
FileDrop
FileDrop.Listener
FileFilter
FileFormatIDWorker
FileFormatIDWorkerTest
FileListByExtTask
FileListByExtTaskTest
FileListByRegexTask
FileListByRegexTaskTest
FileNameUtil
FileScavenger
FileStreamProcessor
FileStreamProcessor
FileUtilTest
FilterStringList
FilterStringListTest
FirstDummySPI
FlattenList
FlattenListEditAction
FlattenListTest
Flavours
FreefluoEnactorProxy
FTableColumn
FTableColumnModel
FTableColumnModelEvent
FTableColumnModelListener
GenBankParserWorker
GenBankParserWorkerTest
GetLSID
GetStreamProcessor
GetStreamTransmitter
GraphColours
GraphSpanningTree
GraphUtilities
HashSetModel
HelloWorld
HomoloGeneWorker
Household
HTMLSummarisableProcessor
Icons
IdentifiedPlugin
IdentifiedPlugin.Factory
IdentifiedPluginImpl
Image
ImageMath
ImageReader
ImageWriter
ImportWorkflowFromFileAction
ImportWorkflowFromURLAction
InfernoProcessor
InfernoProcessorFactory
InfernoProcessorInfoBean
InfernoScavenger
InfernoScavengerHelper
InfernoTask
InfernoXMLHandler
InfiniteProgressPanel
InputPort
InputsNotMatchingException
INSDSeqXMLWorker
InstanceRegistry
InstanceRegistryListener
IntermediateNode
InternalSinkPortHolder
InternalSourcePortHolder
InvalidProfileException
Invoking
InvokingWithIteration
IProcessor
IProcessorTask
IterationCompletionEvent
IterationStrategy
IterationStrategyEditor
IterationStrategyEditorControl
IterationStrategyEditorFactory
IteratorNodeTests
IteratorTest
JavaLog
JDBCBaclavaDataService
JDBCStoreTest
JMolRenderer
JoinIterator
JoinIteratorNode
JTidyWorker
JTidyWorkerTest
JTreeTable
JTreeTable.TreeTableTextField
JxtaRepository
LabelRenderer
Lang
LatestVersionFilter
LatestVersionFilterTest
Launchable
Launcher
LauncherHttpProxyConfiguration
LayoutConstants
LeafNode
LinkingMenus
LiteralValuePartitionAlgorithm
LiteralValuePartitionAlgorithmTest
Loader
LoaderTest
LocalArtifactClassLoader
LocalCommand
LocalCommandTest
LocalRepository
LocalRepository
LocalRepositoryTest
LocalServiceProcessor
LocalServiceProcessorFactory
LocalServiceProcessorInfoBean
LocalServiceScavenger
LocalServiceTask
LocalServiceXMLHandler
LocalWorker
LocalWorkerRegistry
LocalWorkerTest
LocalWorkerTestCase
LocalWorkerWithPorts
LockStepIterator
LockStepIteratorNode
LocusLinkWorker
Log
Log4JConfiguration
Log4JConfiguration
Log4jLog
LogInterface
LogInterface.Priority
LSIDProvider
LSIDProvider.NamespaceEnumeration
MalformedNameException
MarqueeHandler
MinorScuflModelEvent
MissingConstructor
MissingSoaplabException
MobyObjectTreeNode
MobyPanel
MobyParseDatatypeProcessor
MobyParseDatatypeProcessorFactory
MobyParseDatatypeProcessorInfoBean
MobyParseDatatypeScavenger
MobyParseDatatypeTask
MobyParseDatatypeXMLHandler
MobyServiceTreeNode
ModelMap
ModelMap
ModelMap.ModelChangedEvent
ModelMap.ModelChangeListener
ModelMap.ModelCreatedEvent
ModelMap.ModelDestroyedEvent
ModelMap.ModelMapEvent
ModelObjectAction
ModelSpanningTree
MultiCaster
MyGridConfiguration
MyGridConfiguration
MyGridConfigurationTest
NCBIXMLStreamProcessor
NCBIXSLTStreamProcessor
NestedFileChooser
NestedWorkflowCompletionEvent
NestedWorkflowCreationEvent
NestedWorkflowFailureEvent
NestedWorkflowSwitcher
NoContextMenuFoundException
NodeColouringRenderer
NodeListIterable
NoMetadataFoundException
NoSuchLSIDException
NotificationProcessor
NotificationProcessorFactory
NotificationProcessorInfoBean
NotificationProcessorTask
NotificationScavenger
NotificationXMLHandler
NotListedDummySPI
NucleotideFastaWorker
NucleotideGBSeqWorker
NucleotideINSDSeqXMLWorker
NucleotideTinySeqXMLWorker
NucleotideXMLWorker
Observable
Observer
ObserverTest
OfflineToggleModel
OMIMWorker
OpenWorkflowFromFileAction
OpenWorkflowFromURLAction
OutputPort
OverlayListener
PadNumber
PadNumberTest
ParseMobyXML
Partition
PartitionAlgorithm
PartitionAlgorithmListEditor
PartitionAlgorithmSetSPI
PartitionTestApplication
PasswordInput
PerspectiveRegistry
PerspectiveSPI
Plugin
Plugin
Plugin.PluginId
PluginDocument
PluginDocument.Factory
PluginDocumentImpl
PluginEvent
PluginEvent
PluginListCellRenderer
PluginListCellRenderer
PluginListener
PluginListener
PluginListModel
PluginListModel
PluginManager
PluginManager
PluginManagerEvent
PluginManagerEvent
PluginManagerFrame
PluginManagerFrame
PluginManagerListener
PluginManagerListener
PluginRepositoryListener
PluginRepositoryListener
Plugins
Plugins.Factory
PluginsDocument
PluginsDocument.Factory
PluginsDocumentImpl
PluginsImpl
PluginSite
PluginSite
PluginSiteFrame
PluginSiteFrame
PollingPropertiesEditor
PomPropertiesTest
PopupThread
Port
PortCreationException
PortSemanticMarkup
PortTask
PortTest
PositionLayout
PostStreamProcessor
PostStreamTransmitter
PostWorker
PostWorkerTest
PreLauncher
ProcessCancelled
ProcessComplete
ProcessCompletionEvent
ProcessEvent
ProcessFailureEvent
Processor
ProcessorActionRegistry
ProcessorActionSPI
ProcessorCreationException
ProcessorEditor
ProcessorFactory
ProcessorHelper
ProcessorHelperTest
ProcessorInfoBean
ProcessorInfoBeanHelper
ProcessorRegistry
ProcessorSpecFragment
ProcessorTask
ProcessorTaskWorker
ProcessorViewSPI
ProcessPaused
ProcessScheduled
Profile
Profile
Profile.Factory
ProfileFactory
ProfileFactoryTest
ProfileHandler
ProfileHandler
ProfileImpl
ProfileListSelector
ProfileListSelector
ProfileSelector
ProfileSelector
ProfileTest
ProfileUpdateHandler
ProfileUpdateHandler
ProfileVersion
ProfileVersion
ProfileVersionCellRenderer
ProfileVersionCellRenderer
ProfileVersionListFrame
ProfileVersionListFrame
ProfileVersionListModel
ProfileVersionListModel
ProfileVersions
ProfileVersions
PropertyExtractorRegistry
PropertyExtractorSPI
PropertyFetcher
PropertyFetcher.Closure
PropertySheet
PropertySheet.Editor
ProteinFastaWorker
ProteinGBSeqWorker
ProteinINSDSeqXMLWorker
ProteinTinySeqXMLWorker
ProxyConfiguration
ProxyConfiguration
PublicationException
PublishDialog
PubMedEFetchWorker
PubMedESearchWorker
PubMedSearchWorker
Query
Raven
RavenException
RavenProperties
RavenProperties
RDFGeneratorProcessor
RDFGeneratorProcessorFactory
RDFGeneratorProcessorInfoBean
RDFGeneratorScavenger
RDFGeneratorScavengerHelper
RDFGeneratorTask
RDFGeneratorXMLHandler
RDFSClassHolder
RDFSParser
ReadFilesFromDirectory
RegexFileSelector
RegexFileWorker
RegexScanner
RegexScanner.PatternEditor
RegexScanner.Scanner
RegistryListener
RegularExpressionStringList
RemoteSOAPStore
RemoveAction
RenameAction
RendererException
RendererRegistry
RendererSPI
ReplacementStreamProcessor
ReplaceTextFileProcessor
Repositories
Repositories
Repositories
Repositories.Factory
RepositoriesImpl
RepositoriesTest
Repository
Repository
RepositoryForm
RepositoryListener
RepositoryManager
ResetAction
ResultItemPanel
ResultMapSaveRegistry
ResultMapSaveSPI
ResultSource
ResultTable
ResultTable.TableSelectionListener
ResultTableCell
ResultTableCellCollection
ResultTableColumn
ResultTableModel
ResultTablePanel
ResultTableUI
ResultThing
ResumableEnactorProxy
ResumableIterator
RetrievalException
RetrieveWsdlThread
ReverseCompWorker
ReverseCompWorkerTest
RootPartition
RotateImageWorker
RowLayout
RservConfigPanel
RservEditor
RservInputPort
RservProcessor
RservProcessorFactory
RservProcessorInfoBean
RservProcessorTest
RservScavenger
RservTask
RservXMLHandler
RshellConfigPanel
RshellConnection
RshellConnectionManager
RshellConnectionSettings
RshellEditor
RshellFileFilter
RshellInputPort
RshellOutputPort
RshellPortTypes
RshellPortTypes.SymanticTypes
RshellProcessor
RshellProcessorFactory
RshellProcessorInfoBean
RshellScavenger
RshellTask
RshellXMLHandler
RunWorkflowAction
SaveAsDataThingDocument
SaveAsExcel
SaveAsExcelTest
SaveToFileSystem
SaveToFileSystemMappingLSIDs
SaveWorkflowAction
ScaleImageWorker
Scavenger
ScavengerActionRegistry
ScavengerActionSPI
ScavengerCreationException
ScavengerHelper
ScavengerHelperRegistry
ScavengerHelperThreadPool
ScavengerRegistry
Scavengers
ScavengerTree
ScavengerTreePanel
ScavengerTreePanelFactory
ScavengerTreePopupHandler
ScavengerTreeRenderer
ScuflContextMenuAware
ScuflContextMenuFactory
ScuflDiagramPanel
ScuflDiagramPanelFactory
ScuflException
ScuflGraphAttributeChange
ScuflGraphModel
ScuflGraphModelChange
ScuflModel
ScuflModelAction
ScuflModelActionRegistry
ScuflModelActionSPI
ScuflModelAddEvent
ScuflModelEvent
ScuflModelEventListener
ScuflModelEventPrinter
ScuflModelExplorer
ScuflModelExplorerDragHandler
ScuflModelExplorerPopupHandler
ScuflModelExplorerRenderer
ScuflModelReconciler
ScuflModelRemoveEvent
ScuflModelRenameEvent
ScuflModelSet
ScuflModelSet.ScuflModelSetListener
ScuflModelTest
ScuflModelTreeTable
ScuflModelTreeTableContrib
ScuflSemanticMarkupEditor
ScuflSVGDiagram
ScuflSVGDiagramFactory
ScuflWorkflowProcessor
ScuflWorkflowProcessorFactory
SecondDummySPI
SelectFileWorker
SelectWorker
Self
SemanticMarkup
SemanticMarkupViewSPI
SendEmail
SeqVistaRenderer
ServiceError
ServiceFailure
SetBoringAction
SetDefaultValueAction
SetModel
SetModelChangeListener
SetOnlineException
SFTPRepository
ShadedLabel
ShadedLabel
SimpleActionFrame
SimpleFile
SimpleUserContext
SliceList
SliceListEditAction
SliceListTest
SNPWorker
Soap
SoaplabCategory
SoaplabDescriberPanel
SoaplabProcessor
SoaplabProcessorCreation
SoaplabProcessorFactory
SoaplabProcessorInfoBean
SoaplabScavenger
SoaplabScavengerAgent
SoaplabScavengerHelper
SoaplabTask
SoaplabXMLHandler
SpecFragment
SpecFragmentTransferable
SpiRegistry
SPIRegistry
SPIRegistry.SPIRegistryEvent
SPIRegistryTest
SplashScreen
SplitByRegex
SQLQueryWorker
SQLQueryWorkerTest
SQLUpdateWorker
SQLUpdateWorkerTest
StorageException
StreamCopier
StreamCopier
StreamDevourer
StreamDevourer
StreamProcessor
StreamTransmitter
StringConcat
StringConcatTest
StringConstantEditor
StringConstantProcessor
StringConstantProcessorFactory
StringConstantProcessorInfoBean
StringConstantScavenger
StringConstantTask
StringConstantXMLHandler
StringListMerge
StringListMergeTest
StringSetDifference
StringSetDifferenceTest
StringSetIntersection
StringSetIntersectionTest
StringSetUnion
StringSetUnionTest
StringStripDuplicates
StringXMLEmitter
StupidLSIDProvider
SVGRenderer
SwissProtParserWorker
SwissProtParserWorkerTest
TableTreeNodeColumn
TableTreeNodeRenderer
TalismanProcessor
TalismanProcessorCreation
TalismanProcessorFactory
TalismanProcessorInfoBean
TalismanScavenger
TalismanScavengerHelper
TalismanTask
TalismanXMLHandler
TaskExecutionException
TavernaBinaryWorkflowSubmission
TavernaBootstrapLocation
TavernaIcons
TavernaPluginSite
TavernaPluginSite
TavernaSPIRegistry
TavernaStringifiedWorkflowSubmission
TellWorker
TemplateEditor
TemplateEditorFactory
TestAlwaysFailingProcessor
TestApplicationConfig
TestBasePane
TestClassLocation
TestHelloWorld
TestPlugin
TestPluginLoadFromXML
TestPluginSite
TestPreLauncher
TestProfileVersions
TestSometimesFails
Text
TextFileReader
TextFileReaderTest
TextFileWriter
TextFileWriterTest
TextHtml
TextRtf
TextTavernaWebUrl
TextTavernaWebUrlFetcher
TextXGraphviz
TextXml
TimeoutExceeded
ToString
TranscribeWorker
TranscribeWorkerTest
TransferableDataThing
TransformDataThing
TranslateWorker
TranslateWorkerTest
TransmitterException
TreeModelView
TreeTableModel
TreeTableModelAdapter
TreeTableModelView
TreeUtils
UIComponentFactorySPI
UIComponentSPI
UITest
UIUtils
UIUtils.FrameCreator
UnknownPortException
UnknownProcessorException
UnknownWorkflowInstanceException
UnsetBoringAction
UpdatesAvailableIcon
UpdatesAvailableIcon
URLBasedScavenger
UserChangedDataEvent
UserContext
UUIDLSIDProvider
UUIDLSIDProviderTest
ValidatingUserInputDialog
VelocityFileWriter
VelocityFileWriterTest
VersionComparatorTest
VirtualNode
WaitingToRetry
WarnWorker
WebDAVRepository
WebImageFetcher
WebPageFetcher
WebScavenger
WebScavengerHelper
WebScavengerHelperImpl
Workbench
WorkbenchPerspectives
WorkbenchZBasePane
WorkflowChanges
WorkflowCompletionEvent
WorkflowCreationEvent
WorkflowDescription
WorkflowDestroyedEvent
WorkflowEdgeRenderer
WorkflowEditor
WorkflowEditorFactory
WorkflowEditProcessorAction
WorkflowEventAdapter
WorkflowEventDispatcher
WorkflowEventListener
WorkflowEventListenerRegistry
WorkflowFailureEvent
WorkflowInputMapBuilder
WorkflowInputPanel
WorkflowInputPanelFactory
WorkflowInstance
WorkflowInstanceContainer
WorkflowInstanceContainerFactory
WorkflowInstanceEvent
WorkflowInstanceImpl
WorkflowInstanceSetViewSPI
WorkflowLauncher
WorkflowLauncherWrapper
WorkflowModelViewSPI
WorkflowPerspective
WorkflowProcessor
WorkflowProcessorFactory
WorkflowProcessorInfoBean
WorkflowScavenger
WorkflowScavengerHelper
WorkflowSubmissionException
WorkflowSubmitException
WorkflowSummaryAsHTML
WorkflowTask
WorkflowTestCase
WorkflowToBeDestroyedEvent
WorkflowXMLHandler
WSDLBasedProcessor
WSDLBasedProcessorFactory
WSDLBasedScavenger
WSDLInvocationTask
WSDLProcessorInfoBean
WSDLScavengerHelper
WSDLXMLHandler
XMLExtensible
XMLHandler
XMLInputSplitter
XMLOutputSplitter
XMLSplittableInputPort
XMLSplittableOutputPort
XMLSplitterScuflContextMenuFactory
XMLTree
XmlUtil
XMLUtilities
XMLUtilitiesTest
XPathFileSelector
XPathTextWorker
XPathWorker
XQueryWorker
XScufl
XScufl2Dot
XScuflFormatException
XScuflParser
XScuflTextArea
XScuflTextAreaFactory
XScuflTree
XScuflTreeFactory
XScuflView
XScuflViewTest
XSLTStreamProcessor
XSLTWorker
ZBasePane
ZBlankComponent
ZIcons
ZPane
ZRavenComponent
ZSplitPane
ZTabbedPane
ZTreeNode