Uses of Package
org.embl.ebi.escience.scufl

Packages that use org.embl.ebi.escience.scufl
net.sourceforge.taverna.scuflworkers.bsf Provides LocalWorkers capable of handling scripts written in any Bean Scripting Framework language. 
nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor   
nl.utwente.ewi.hmi.taverna.scuflworkers.rshell   
org.biomoby.client.taverna.plugin   
org.embl.ebi.escience.baclava Provides the data model for the Taverna workflow system. 
org.embl.ebi.escience.scufl Provides the object model for the Simple Conceptual Unified Flow Language (Scufl). 
org.embl.ebi.escience.scufl.enactor Provides a simple facade layer to allow invocation of either an in memory instance of the workflow enactor or a remote and potentially federated cluster of enactor services. 
org.embl.ebi.escience.scufl.enactor.event   
org.embl.ebi.escience.scufl.enactor.implementation Implementations of the various enactor proxy interfaces, these classes perform the communication between proxy interface and real enactor instance, wherever that may be. 
org.embl.ebi.escience.scufl.parser Provides functionality to populate ScuflModel instances from textual and XML dialects of the Scufl language. 
org.embl.ebi.escience.scufl.provenance.process Provides an API for querying and extracting process provenance information from a running workflow instance. 
org.embl.ebi.escience.scufl.shared   
org.embl.ebi.escience.scufl.tools Provides user level command line and graphical tools to manipulate and display scufl model instances. 
org.embl.ebi.escience.scufl.view Provides classes that present a view on a ScuflModel instance. 
org.embl.ebi.escience.scuflui Provides Java Swing components that show or allow manipulation of subsets of the ScuflModel state. 
org.embl.ebi.escience.scuflui.actions   
org.embl.ebi.escience.scuflui.graph   
org.embl.ebi.escience.scuflui.graph.model   
org.embl.ebi.escience.scuflui.renderers Provides a Service Provider Interface (SPI) for rendering the data in a workflow. 
org.embl.ebi.escience.scuflui.results   
org.embl.ebi.escience.scuflui.shared   
org.embl.ebi.escience.scuflui.spi   
org.embl.ebi.escience.scuflui.treeview   
org.embl.ebi.escience.scuflui.workbench   
org.embl.ebi.escience.scuflworkers   
org.embl.ebi.escience.scuflworkers.apiconsumer   
org.embl.ebi.escience.scuflworkers.beanshell   
org.embl.ebi.escience.scuflworkers.biomart   
org.embl.ebi.escience.scuflworkers.dependency   
org.embl.ebi.escience.scuflworkers.inferno   
org.embl.ebi.escience.scuflworkers.java   
org.embl.ebi.escience.scuflworkers.java.actions   
org.embl.ebi.escience.scuflworkers.notification   
org.embl.ebi.escience.scuflworkers.rdfgenerator   
org.embl.ebi.escience.scuflworkers.rserv   
org.embl.ebi.escience.scuflworkers.soaplab   
org.embl.ebi.escience.scuflworkers.stringconstant   
org.embl.ebi.escience.scuflworkers.talisman   
org.embl.ebi.escience.scuflworkers.web   
org.embl.ebi.escience.scuflworkers.workflow   
org.embl.ebi.escience.scuflworkers.wsdl   
uk.ac.soton.itinnovation.taverna.enactor.broker Provides classes associated with taking an XScufl workflow definition, converting it to the myGrid enactor conceptual model and submitting it to the core enactor module. 
uk.ac.soton.itinnovation.taverna.enactor.entities Provides all the Taverna specific tasks that are executable by the myGrid workflow enactor core. 
 

Classes in org.embl.ebi.escience.scufl used by net.sourceforge.taverna.scuflworkers.bsf
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by nl.utwente.ewi.hmi.taverna.scuflworkers.rshell
DuplicatePortNameException
          Thrown by the constructor of the Port class when a duplicate name is added to a particular processor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
InputPort
          A port that consumes data on behalf of a processor
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
OutputPort
          A port that exposes output data on behalf of a processor
Port
          An abstract superclass of all processor ports
PortCreationException
          Thrown by the Port constructor if either of the arguments passed are null, or if the name is the empty string.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by org.biomoby.client.taverna.plugin
DuplicatePortNameException
          Thrown by the constructor of the Port class when a duplicate name is added to a particular processor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Port
          An abstract superclass of all processor ports
PortCreationException
          Thrown by the Port constructor if either of the arguments passed are null, or if the name is the empty string.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.baclava
SemanticMarkup
           
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl
AlternateProcessor
          Represents an alternate processor to be used in case of failures in the primary.
AnnotationTemplate
          An AnnotationTemplate object represents a single possible RDF statement that may be generated as a side effect of the invocation of a processor task instance.
ConcurrencyConstraint
          Represents a concurrency constraint between two processors
ConcurrencyConstraintCreationException
          Thrown by the ConcurrencyConstraint constructor if the arguments passed in are invalid.
DataConstraint
          Represents a data dependancy between two processors
DataConstraintCreationException
          Thrown by the DataConstraint constructor if the arguments passed in are invalid.
DuplicateConcurrencyConstraintNameException
          Thrown by the constructor of the ConcurrencyConstraint class when a duplicate name is added to a particular ScuflModel
DuplicatePortNameException
          Thrown by the constructor of the Port class when a duplicate name is added to a particular processor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
InputPort
          A port that consumes data on behalf of a processor
IProcessor
          Interface for processor implementations
IterationStrategy
          Defines the manner in which iterators should be constructed for a given processor instance.
MalformedNameException
          Thrown by the locatePort method in ScuflModel when the supplied name doesn't conform to the naming rules.
OutputPort
          A port that exposes output data on behalf of a processor
Port
          An abstract superclass of all processor ports
PortCreationException
          Thrown by the Port constructor if either of the arguments passed are null, or if the name is the empty string.
PortSemanticMarkup
          A SemanticMarkup for Ports that fires ScuflModelEvents when markup elements are changed.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
SemanticMarkup
           
SetOnlineException
          Thrown from the model when there is a problem going from offline to online mode - normally this is a similar problem to the workflow load but I guess there could be additional factors.
UnknownPortException
          Thrown by the Processor classes when then can't find a particular named port.
UnknownProcessorException
          Thrown by the ScuflModel when it can't find a particular named processor.
WorkflowDescription
          A container class for the metadata about a workflow definition, including LSID if available, description and author information
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.enactor
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
UnknownProcessorException
          Thrown by the ScuflModel when it can't find a particular named processor.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.enactor.event
Processor
          An abstract superclass of the various processor subtypes
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.enactor.implementation
ScuflModel
          Represents a single scufl workflow model
UnknownProcessorException
          Thrown by the ScuflModel when it can't find a particular named processor.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.parser
ConcurrencyConstraintCreationException
          Thrown by the ConcurrencyConstraint constructor if the arguments passed in are invalid.
DataConstraintCreationException
          Thrown by the DataConstraint constructor if the arguments passed in are invalid.
DuplicateConcurrencyConstraintNameException
          Thrown by the constructor of the ConcurrencyConstraint class when a duplicate name is added to a particular ScuflModel
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
MalformedNameException
          Thrown by the locatePort method in ScuflModel when the supplied name doesn't conform to the naming rules.
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
UnknownPortException
          Thrown by the Processor classes when then can't find a particular named port.
UnknownProcessorException
          Thrown by the ScuflModel when it can't find a particular named processor.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.provenance.process
IterationStrategy
          Defines the manner in which iterators should be constructed for a given processor instance.
Processor
          An abstract superclass of the various processor subtypes
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.shared
OutputPort
          A port that exposes output data on behalf of a processor
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.tools
ConcurrencyConstraintCreationException
          Thrown by the ConcurrencyConstraint constructor if the arguments passed in are invalid.
DataConstraintCreationException
          Thrown by the DataConstraint constructor if the arguments passed in are invalid.
DuplicateConcurrencyConstraintNameException
          Thrown by the constructor of the ConcurrencyConstraint class when a duplicate name is added to a particular ScuflModel
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
MalformedNameException
          Thrown by the locatePort method in ScuflModel when the supplied name doesn't conform to the naming rules.
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
UnknownPortException
          Thrown by the Processor classes when then can't find a particular named port.
UnknownProcessorException
          Thrown by the ScuflModel when it can't find a particular named processor.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scufl.view
ConcurrencyConstraintCreationException
          Thrown by the ConcurrencyConstraint constructor if the arguments passed in are invalid.
DataConstraintCreationException
          Thrown by the DataConstraint constructor if the arguments passed in are invalid.
DuplicateConcurrencyConstraintNameException
          Thrown by the constructor of the ConcurrencyConstraint class when a duplicate name is added to a particular ScuflModel
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
MalformedNameException
          Thrown by the locatePort method in ScuflModel when the supplied name doesn't conform to the naming rules.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
SetOnlineException
          Thrown from the model when there is a problem going from offline to online mode - normally this is a similar problem to the workflow load but I guess there could be additional factors.
UnknownPortException
          Thrown by the Processor classes when then can't find a particular named port.
UnknownProcessorException
          Thrown by the ScuflModel when it can't find a particular named processor.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui
IterationStrategy
          Defines the manner in which iterators should be constructed for a given processor instance.
Port
          An abstract superclass of all processor ports
Processor
          An abstract superclass of the various processor subtypes
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
SemanticMarkup
           
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.actions
InputPort
          A port that consumes data on behalf of a processor
Port
          An abstract superclass of all processor ports
Processor
          An abstract superclass of the various processor subtypes
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.graph
Port
          An abstract superclass of all processor ports
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.graph.model
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.renderers
ScuflException
          Base class for all Scufl exceptions
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.results
Port
          An abstract superclass of all processor ports
Processor
          An abstract superclass of the various processor subtypes
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.shared
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.spi
Processor
          An abstract superclass of the various processor subtypes
ScuflModel
          Represents a single scufl workflow model
SemanticMarkup
           
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.treeview
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflui.workbench
ScuflException
          Base class for all Scufl exceptions
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.apiconsumer
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.beanshell
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.biomart
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.dependency
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.inferno
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.java
DuplicatePortNameException
          Thrown by the constructor of the Port class when a duplicate name is added to a particular processor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
InputPort
          A port that consumes data on behalf of a processor
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
OutputPort
          A port that exposes output data on behalf of a processor
Port
          An abstract superclass of all processor ports
PortCreationException
          Thrown by the Port constructor if either of the arguments passed are null, or if the name is the empty string.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.java.actions
Processor
          An abstract superclass of the various processor subtypes
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.notification
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.rdfgenerator
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.rserv
DuplicatePortNameException
          Thrown by the constructor of the Port class when a duplicate name is added to a particular processor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
InputPort
          A port that consumes data on behalf of a processor
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Port
          An abstract superclass of all processor ports
PortCreationException
          Thrown by the Port constructor if either of the arguments passed are null, or if the name is the empty string.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
ScuflModelEvent
          Signifies a change in the model that might be of interest to a view
ScuflModelEventListener
          Implementors can respond to ScuflModelEvent messages, and may register themselves with a ScuflModel.
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.soaplab
DuplicatePortNameException
          Thrown by the constructor of the Port class when a duplicate name is added to a particular processor
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
PortCreationException
          Thrown by the Port constructor if either of the arguments passed are null, or if the name is the empty string.
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.stringconstant
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.talisman
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.web
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.workflow
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
ScuflWorkflowProcessor
          Interface to help seperate the cyclic dependancies between WorkflowProcessor and ScuflModel
ScuflWorkflowProcessorFactory
          Inteface to help break the cyclic dependancy between WorkflowProcessorFactory and Scufl
 

Classes in org.embl.ebi.escience.scufl used by org.embl.ebi.escience.scuflworkers.wsdl
DuplicateProcessorNameException
          Thrown by the constructor of the Processor class when a duplicate name is added to a particular ScuflModel
IProcessor
          Interface for processor implementations
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Processor
          An abstract superclass of the various processor subtypes
ProcessorCreationException
          Thrown by the Processor constructor if either of the arguments passed are null, or if the name is the empty string.
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by uk.ac.soton.itinnovation.taverna.enactor.broker
ScuflModel
          Represents a single scufl workflow model
 

Classes in org.embl.ebi.escience.scufl used by uk.ac.soton.itinnovation.taverna.enactor.entities
IProcessorTask
          An interface representing a ProcessorTask (created to break the dependancy between ProcessorTaskImpl and ProcessorTaskWorker).
Port
          An abstract superclass of all processor ports
Processor
          An abstract superclass of the various processor subtypes