Uses of Class
org.embl.ebi.escience.scufl.Processor

Packages that use Processor
net.sourceforge.taverna.scuflworkers.bsf Provides LocalWorkers capable of handling scripts written in any Bean Scripting Framework language. 
nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor   
nl.utwente.ewi.hmi.taverna.scuflworkers.rshell   
org.biomoby.client.taverna.plugin   
org.embl.ebi.escience.scufl Provides the object model for the Simple Conceptual Unified Flow Language (Scufl). 
org.embl.ebi.escience.scufl.enactor.event   
org.embl.ebi.escience.scufl.provenance.process Provides an API for querying and extracting process provenance information from a running workflow instance. 
org.embl.ebi.escience.scufl.view Provides classes that present a view on a ScuflModel instance. 
org.embl.ebi.escience.scuflui Provides Java Swing components that show or allow manipulation of subsets of the ScuflModel state. 
org.embl.ebi.escience.scuflui.actions   
org.embl.ebi.escience.scuflui.results   
org.embl.ebi.escience.scuflui.spi   
org.embl.ebi.escience.scuflworkers   
org.embl.ebi.escience.scuflworkers.apiconsumer   
org.embl.ebi.escience.scuflworkers.beanshell   
org.embl.ebi.escience.scuflworkers.biomart   
org.embl.ebi.escience.scuflworkers.biomoby   
org.embl.ebi.escience.scuflworkers.dependency   
org.embl.ebi.escience.scuflworkers.inferno   
org.embl.ebi.escience.scuflworkers.java   
org.embl.ebi.escience.scuflworkers.java.actions   
org.embl.ebi.escience.scuflworkers.notification   
org.embl.ebi.escience.scuflworkers.rdfgenerator   
org.embl.ebi.escience.scuflworkers.rserv   
org.embl.ebi.escience.scuflworkers.soaplab   
org.embl.ebi.escience.scuflworkers.stringconstant   
org.embl.ebi.escience.scuflworkers.talisman   
org.embl.ebi.escience.scuflworkers.workflow   
org.embl.ebi.escience.scuflworkers.wsdl   
uk.ac.soton.itinnovation.taverna.enactor.entities Provides all the Taverna specific tasks that are executable by the myGrid workflow enactor core. 
 

Uses of Processor in net.sourceforge.taverna.scuflworkers.bsf
 

Subclasses of Processor in net.sourceforge.taverna.scuflworkers.bsf
 class BSFProcessor
          A processor that uses the BSF scripting engine to allow arbitrary scripts to be invoked on workflow data.
 

Methods in net.sourceforge.taverna.scuflworkers.bsf that return Processor
 Processor BSFXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in net.sourceforge.taverna.scuflworkers.bsf with parameters of type Processor
 org.jdom.Element BSFXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener BSFEditor.getListener(Processor theProcessor)
           
 

Constructors in net.sourceforge.taverna.scuflworkers.bsf with parameters of type Processor
BSFTask(Processor p)
           
 

Uses of Processor in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor
 

Subclasses of Processor in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor
 class APProcessor
          The abstract processor is a processor that contains a set of input ports and output ports and a brief description what it should do If the processor has an alternate, it executes the alternate, otherwise it does nothing
 

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor that return Processor
 Processor APXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name)
          Method for loading an xml processor from XML
 

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor with parameters of type Processor
 org.jdom.Element APXMLHandler.elementForProcessor(Processor processor)
          Method for getting the xml element for the processor
 java.awt.event.ActionListener APEditor.getListener(Processor theProcessor)
          Method for getting the listener for the editor
 

Constructors in nl.utwente.ewi.hmi.taverna.scuflworkers.abstractprocessor with parameters of type Processor
APTask(Processor processor)
          Constructor of the task object
 

Uses of Processor in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell
 

Subclasses of Processor in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell
 class RshellProcessor
          A processor that uses the Rshell scripting engine to allow R (the free version of S) to be invoked on workflow data.
 

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell that return Processor
 Processor RshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorElement, ScuflModel model, java.lang.String name)
          Method for loading an xml processor from XML
 

Methods in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell with parameters of type Processor
 org.jdom.Element RshellXMLHandler.elementForProcessor(Processor processor)
          Method for getting the xml element for the processor
 java.awt.event.ActionListener RshellEditor.getListener(Processor theProcessor)
           
 

Constructors in nl.utwente.ewi.hmi.taverna.scuflworkers.rshell with parameters of type Processor
RshellInputPort(Processor processor, java.lang.String name)
          Constructor for input port
RshellOutputPort(Processor processor, java.lang.String name)
          Constructor
RshellTask(Processor processor)
          Constructor
 

Uses of Processor in org.biomoby.client.taverna.plugin
 

Subclasses of Processor in org.biomoby.client.taverna.plugin
 class BiomobyObjectProcessor
           
 class BiomobyProcessor
          A processor based on the Biomoby compliant web services.
 class MobyParseDatatypeProcessor
          A processor that breaks up a Moby datatype into its component parts minus all the moby wrappings.
 

Methods in org.biomoby.client.taverna.plugin that return Processor
 Processor MobyParseDatatypeXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 Processor BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)
           
 Processor BiomobyObjectXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)
           
 

Methods in org.biomoby.client.taverna.plugin with parameters of type Processor
 boolean ConfigureMobyServiceAction.canHandle(Processor processor)
           
 boolean BiomobyWidgetAction.canHandle(Processor processor)
           
 boolean BiomobyObjectAction.canHandle(Processor processor)
           
 boolean BiomobyAction.canHandle(Processor processor)
           
 boolean AddParserAction.canHandle(Processor processor)
           
 org.jdom.Element MobyParseDatatypeXMLHandler.elementForProcessor(Processor p)
           
 org.jdom.Element BiomobyXMLHandler.elementForProcessor(Processor p)
           
 org.jdom.Element BiomobyObjectXMLHandler.elementForProcessor(Processor p)
           
 javax.swing.JComponent ConfigureMobyServiceAction.getComponent(Processor processor)
           
 javax.swing.JComponent BiomobyWidgetAction.getComponent(Processor processor)
           
 javax.swing.JComponent BiomobyObjectAction.getComponent(Processor processor)
           
 javax.swing.JComponent BiomobyAction.getComponent(Processor processor)
           
 javax.swing.JComponent AddParserAction.getComponent(Processor processor)
           
 

Method parameters in org.biomoby.client.taverna.plugin with type arguments of type Processor
 java.lang.String BiomobyProcessor.getHTMLSummary(java.util.List<HTMLSummarisableProcessor> processors, java.util.Map<java.lang.String,Processor> names)
           
 

Constructors in org.biomoby.client.taverna.plugin with parameters of type Processor
BiomobyObjectTask(Processor p)
           
BiomobyTask(Processor p)
           
CopyOfBiomobyTask(Processor p)
           
MobyParseDatatypeTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scufl
 

Subclasses of Processor in org.embl.ebi.escience.scufl
 class InternalSinkPortHolder
          A Processor subclass to hold ports for the overall workflow outputs, these ports are therefore held as input ports, acting as they do as data sinks.
 class InternalSourcePortHolder
          A Processor subclass to hold ports for the overal workflow inputs.
 

Methods in org.embl.ebi.escience.scufl that return Processor
 Processor ConcurrencyConstraint.getControllingProcessor()
          Return the processor whos state is controlling the transition of the target processor
 Processor AlternateProcessor.getOriginalProcessor()
          Return the processor for which this container holds the alternate implementation.
 Processor Port.getProcessor()
          Get the processor that this port belongs to.
 Processor IProcessorTask.getProcessor()
           
 Processor AlternateProcessor.getProcessor()
          Return the alternate processor object.
 Processor[] ScuflModel.getProcessors()
          Return an array of the Processor objects defined by this workflow model
 Processor[] ScuflModel.getProcessorsOfType(java.lang.Class type)
          Returns an array of Processors that are an instance of the Class
 Processor ConcurrencyConstraint.getTargetProcessor()
          Return the processor that this constraint is regulating
 Processor ScuflModel.getWorkflowSinkProcessor()
          Return the internal processor that holds the overall workflow sink ports
 Processor ScuflModel.getWorkflowSourceProcessor()
          Return the internal processor that represents the workflow sources.
 Processor ScuflModel.locateProcessor(java.lang.String processor_name)
          Locate a named processor
 

Methods in org.embl.ebi.escience.scufl with parameters of type Processor
 void ScuflModel.addProcessor(Processor processor)
          Add a processor to the model.
 void ScuflModel.destroyProcessor(Processor processor)
          Destroy a processor, this also removes any data constraints that have the processor as either a source or a sink.
 void AlternateProcessor.setOriginalProcessor(Processor p)
           
 

Constructors in org.embl.ebi.escience.scufl with parameters of type Processor
AlternateProcessor(Processor alternate)
           
ConcurrencyConstraint(ScuflModel model, java.lang.String name, Processor controller, Processor target, int targetStateFrom, int targetStateTo, int controllerStateGuard)
          Create a new concurrency constraint.
InputPort(Processor processor, java.lang.String name)
           
IterationStrategy(Processor p)
          Create a new IterationStrategy with the default iteration strategy for the supplied processor
OutputPort(Processor processor, java.lang.String name)
           
Port(Processor processor, java.lang.String name)
          Create a new port (obviously you can't actually construct this because it's abstract.
 

Uses of Processor in org.embl.ebi.escience.scufl.enactor.event
 

Methods in org.embl.ebi.escience.scufl.enactor.event that return Processor
 Processor ProcessFailureEvent.getProcessor()
           
 Processor ProcessCompletionEvent.getProcessor()
           
 Processor NestedWorkflowFailureEvent.getProcessor()
           
 Processor NestedWorkflowCompletionEvent.getProcessor()
           
 Processor IterationCompletionEvent.getProcessor()
           
 

Constructors in org.embl.ebi.escience.scufl.enactor.event with parameters of type Processor
IterationCompletionEvent(java.util.Map structureMapping, java.util.Map inputShredding, WorkflowInstance wf, Processor activeProcessor, java.util.List associatedCompletionEvents, java.util.Map inputs, java.util.Map outputs)
           
NestedWorkflowCompletionEvent(boolean isIterating, java.util.Map inputs, java.util.Map outputs, Processor proc, WorkflowInstance workflow, WorkflowInstance nestedWorkflow)
           
NestedWorkflowFailureEvent(WorkflowInstance workflow, Processor processor, java.lang.Exception cause, java.util.Map inputs, WorkflowInstance nestedWorkflow)
           
ProcessCompletionEvent(boolean isIterating, java.util.Map inputs, java.util.Map outputs, Processor proc, WorkflowInstance workflow)
           
ProcessFailureEvent(WorkflowInstance workflow, Processor processor, java.lang.Exception cause, java.util.Map inputs)
           
 

Uses of Processor in org.embl.ebi.escience.scufl.provenance.process
 

Constructors in org.embl.ebi.escience.scufl.provenance.process with parameters of type Processor
AlternateProcessScheduled(Processor p)
          Create a new event corresponding to the scheduling of the specified processor
ProcessCancelled(Processor p)
          Create a new event corresponding to the pausing of the specified processor
ProcessPaused(Processor p)
          Create a new event corresponding to the pausing of the specified processor
ProcessScheduled(Processor p)
          Create a new event corresponding to the scheduling of the specified processor
 

Uses of Processor in org.embl.ebi.escience.scufl.view
 

Methods in org.embl.ebi.escience.scufl.view with parameters of type Processor
static java.lang.String WorkflowSummaryAsHTML.nameFor(java.util.Map names, Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflui
 

Methods in org.embl.ebi.escience.scuflui with parameters of type Processor
 void IterationStrategyEditor.attachToModel(Processor p)
           
 void TemplateEditor.attachToModel(Processor p)
           
 

Constructors in org.embl.ebi.escience.scuflui with parameters of type Processor
TemplateEditor(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflui.actions
 

Methods in org.embl.ebi.escience.scuflui.actions with parameters of type Processor
 boolean UnsetBoringAction.canHandle(Processor processor)
           
 boolean SetBoringAction.canHandle(Processor processor)
           
 java.util.List<ProcessorActionSPI> ProcessorActionRegistry.getActions(Processor processor)
          Return a List containing all instances of the ProcessorActionSPI which think they can operate on the specified processor
abstract  javax.swing.JComponent AbstractProcessorAction.getComponent(Processor processor)
          Implement this to define the component which will be created in the new UIUtils frame when the menu item, button or whatever is activated
 java.awt.event.ActionListener SetBoringAction.getListener(Processor processor)
           
 java.awt.event.ActionListener AbstractProcessorAction.getListener(Processor processor)
           
 

Uses of Processor in org.embl.ebi.escience.scuflui.results
 

Methods in org.embl.ebi.escience.scuflui.results that return Processor
 Processor ResultSource.getProcessor()
           
 

Methods in org.embl.ebi.escience.scuflui.results with parameters of type Processor
 void ResultSource.addOutputProcessor(Processor processor)
           
 

Uses of Processor in org.embl.ebi.escience.scuflui.spi
 

Methods in org.embl.ebi.escience.scuflui.spi with parameters of type Processor
 void ProcessorViewSPI.attachToModel(Processor p)
          Directs the implementing component to bind to the specified Processor instance, refresh its internal state from the model and commence listening to events, maintaining its state as these events dictate.
 boolean ProcessorActionSPI.canHandle(Processor processor)
          Can this action handle the specified processor? Return true if this action is applicable.
 java.awt.event.ActionListener ProcessorActionSPI.getListener(Processor processor)
          Return an ActionListener to be attached to whatever component is being generated.
 

Uses of Processor in org.embl.ebi.escience.scuflworkers
 

Methods in org.embl.ebi.escience.scuflworkers that return Processor
 Processor ProcessorFactory.createProcessor(java.lang.String name, ScuflModel model)
          Instantiate a new processor with the supplied name and bind it to the specified model.
static Processor ProcessorHelper.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
          Spit back a processor given a chunk of xml, the element passed in being the 'processor' tag return null if we can't handle it
 Processor XMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
          Create a new processor from the given chunk of XML
 

Methods in org.embl.ebi.escience.scuflworkers with parameters of type Processor
static org.jdom.Element ProcessorHelper.elementForProcessor(Processor p)
          Given a processor instance, return the 'spec' block of XML that represents the processor in the XScufl language.
 org.jdom.Element XMLHandler.elementForProcessor(Processor p)
          Return the spec element, that is to say the processor specific portion of the processor element.
static org.jdom.Element ProcessorHelper.elementForProcessor(Processor p, boolean decorations)
          Given a processor instance, return the 'spec' block of XML that represents the processor in the XScufl language.
 java.awt.event.ActionListener ProcessorEditor.getListener(Processor theProcessor)
          Return an action listener to edit the processor when invoked from the context menu.
static java.lang.String ProcessorHelper.getPreferredColour(Processor p)
          Given a processor instance, return the preferred colour to be used for UI representations.
static javax.swing.ImageIcon ProcessorHelper.getPreferredIcon(Processor p)
          Given a processor instance, return an image icon to be used in, for example, tree renderer objects.
static java.lang.String ProcessorHelper.getTaskClassName(Processor p)
          Given a processor instance, return the fully qualified class name of a TavernaTask for the myGrid enactor to invoke the operation represented by the processor
static ProcessorTaskWorker ProcessorHelper.getTaskWorker(Processor p)
          Given a processor instance, return a concrete task worker for that instance.
 

Method parameters in org.embl.ebi.escience.scuflworkers with type arguments of type Processor
 java.lang.String HTMLSummarisableProcessor.getHTMLSummary(java.util.List<HTMLSummarisableProcessor> processors, java.util.Map<java.lang.String,Processor> names)
          Generates the html tables for a list of processors, creating a table grouped by resource host.
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.apiconsumer
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.apiconsumer
 class APIConsumerProcessor
          Processor for the API consumer worker
 

Methods in org.embl.ebi.escience.scuflworkers.apiconsumer that return Processor
 Processor APIConsumerXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.apiconsumer with parameters of type Processor
 org.jdom.Element APIConsumerXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener APIConsumerEditor.getListener(Processor theProcessor)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.apiconsumer with parameters of type Processor
APIConsumerTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.beanshell
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.beanshell
 class BeanshellProcessor
          A processor that uses the Beanshell scripting engine to allow arbitrary java scripts to be invoked on workflow data.
 

Methods in org.embl.ebi.escience.scuflworkers.beanshell that return Processor
 Processor BeanshellXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.beanshell with parameters of type Processor
 org.jdom.Element BeanshellXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener BeanshellEditor.getListener(Processor theProcessor)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.beanshell with parameters of type Processor
BeanshellTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.biomart
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.biomart
 class BiomartProcessor
           
 

Methods in org.embl.ebi.escience.scuflworkers.biomart that return Processor
 Processor BiomartXMLHandler.loadProcessorFromXML(org.jdom.Element element, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.biomart with parameters of type Processor
 org.jdom.Element BiomartXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener BiomartEditor.getListener(Processor theProcessor)
           
 

Method parameters in org.embl.ebi.escience.scuflworkers.biomart with type arguments of type Processor
 java.lang.String BiomartProcessor.getHTMLSummary(java.util.List<HTMLSummarisableProcessor> processors, java.util.Map<java.lang.String,Processor> names)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.biomart with parameters of type Processor
BiomartTask(Processor p)
          Constructs a BiomartTask.
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.biomoby
 

Methods in org.embl.ebi.escience.scuflworkers.biomoby that return Processor
 Processor BiomobyXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String processorName)
           
 

Methods in org.embl.ebi.escience.scuflworkers.biomoby with parameters of type Processor
 org.jdom.Element BiomobyXMLHandler.elementForProcessor(Processor p)
           
 

Method parameters in org.embl.ebi.escience.scuflworkers.biomoby with type arguments of type Processor
 java.lang.String BiomobyProcessor.getHTMLSummary(java.util.List<HTMLSummarisableProcessor> processors, java.util.Map<java.lang.String,Processor> names)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.biomoby with parameters of type Processor
BiomobyTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.dependency
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.dependency
 class DependencyProcessor
          A processor that needs dependency management.
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.inferno
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.inferno
 class InfernoProcessor
          Processor corresponding to a single instance of an SGS based streaming service.
 

Methods in org.embl.ebi.escience.scuflworkers.inferno that return Processor
 Processor InfernoXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.inferno with parameters of type Processor
 org.jdom.Element InfernoXMLHandler.elementForProcessor(Processor p)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.inferno with parameters of type Processor
InfernoTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.java
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.java
 class LocalServiceProcessor
          A processor that runs the quick Java plugins defined by the LocalService interface in this package.
 

Methods in org.embl.ebi.escience.scuflworkers.java that return Processor
 Processor LocalServiceXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.java with parameters of type Processor
 org.jdom.Element LocalServiceXMLHandler.elementForProcessor(Processor p)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.java with parameters of type Processor
LocalServiceTask(Processor p)
           
XMLSplittableInputPort(Processor processor, java.lang.String name)
           
XMLSplittableOutputPort(Processor processor, java.lang.String name)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.java.actions
 

Methods in org.embl.ebi.escience.scuflworkers.java.actions with parameters of type Processor
 boolean SliceListEditAction.canHandle(Processor processor)
          Only handles LocalServiceProcessor based on SliceList
 boolean FlattenListEditAction.canHandle(Processor processor)
          Only handles LocalServiceProcessor based on FlattenList
 javax.swing.JComponent SliceListEditAction.getComponent(Processor processor)
           
 javax.swing.JComponent FlattenListEditAction.getComponent(Processor processor)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.notification
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.notification
 class NotificationProcessor
          A Processor for publishing notifications to the myGrid notification service.
 

Methods in org.embl.ebi.escience.scuflworkers.notification that return Processor
 Processor NotificationXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.notification with parameters of type Processor
 org.jdom.Element NotificationXMLHandler.elementForProcessor(Processor processor)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.notification with parameters of type Processor
NotificationProcessorTask(Processor p)
          Creates a new instance of NotificationProcessorTaskImpl The processor used here is a dummy processor just to plug in to taverna for gui purposes.
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.rdfgenerator
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.rdfgenerator
 class RDFGeneratorProcessor
          A processor to generate rdf statements
 

Methods in org.embl.ebi.escience.scuflworkers.rdfgenerator that return Processor
 Processor RDFGeneratorXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.rdfgenerator with parameters of type Processor
 org.jdom.Element RDFGeneratorXMLHandler.elementForProcessor(Processor p)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.rdfgenerator with parameters of type Processor
RDFGeneratorTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.rserv
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.rserv
 class RservProcessor
          A processor that uses the Rserv scripting engine to allow R (the free version of S) to be invoked on workflow data.
 

Methods in org.embl.ebi.escience.scuflworkers.rserv that return Processor
 Processor RservXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.rserv with parameters of type Processor
 org.jdom.Element RservXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener RservEditor.getListener(Processor theProcessor)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.rserv with parameters of type Processor
RservInputPort(Processor processor, java.lang.String name)
           
RservTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.soaplab
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.soaplab
 class SoaplabProcessor
          A processor based on the Soaplab web service around the EMBOSS tools.
 

Methods in org.embl.ebi.escience.scuflworkers.soaplab that return Processor
 Processor SoaplabXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.soaplab with parameters of type Processor
 boolean SoaplabDescriberPanel.canHandle(Processor processor)
           
 org.jdom.Element SoaplabXMLHandler.elementForProcessor(Processor p)
           
 javax.swing.JComponent SoaplabDescriberPanel.getComponent(Processor processor)
           
 java.awt.event.ActionListener PollingPropertiesEditor.getListener(Processor theProcessor)
           
 

Method parameters in org.embl.ebi.escience.scuflworkers.soaplab with type arguments of type Processor
 java.lang.String SoaplabProcessor.getHTMLSummary(java.util.List<HTMLSummarisableProcessor> processors, java.util.Map<java.lang.String,Processor> names)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.soaplab with parameters of type Processor
SoaplabTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.stringconstant
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.stringconstant
 class StringConstantProcessor
          A processor to contain a single string constant
 

Methods in org.embl.ebi.escience.scuflworkers.stringconstant that return Processor
 Processor StringConstantXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.stringconstant with parameters of type Processor
 org.jdom.Element StringConstantXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener StringConstantEditor.getListener(Processor theProcessor)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.stringconstant with parameters of type Processor
StringConstantTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.talisman
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.talisman
 class TalismanProcessor
          A processor that makes use of a local installation of the Talisman classes to perform its operations.
 

Methods in org.embl.ebi.escience.scuflworkers.talisman that return Processor
 Processor TalismanXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.talisman with parameters of type Processor
 org.jdom.Element TalismanXMLHandler.elementForProcessor(Processor p)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.talisman with parameters of type Processor
TalismanTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.workflow
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.workflow
 class WorkflowProcessor
          A processor containing a full ScuflModel instance.
 

Methods in org.embl.ebi.escience.scuflworkers.workflow that return Processor
 Processor WorkflowXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.workflow with parameters of type Processor
 boolean WorkflowEditProcessorAction.canHandle(Processor processor)
           
 org.jdom.Element WorkflowXMLHandler.elementForProcessor(Processor p)
           
 java.awt.event.ActionListener WorkflowEditProcessorAction.getListener(Processor processor)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.workflow with parameters of type Processor
WorkflowTask(Processor p)
           
 

Uses of Processor in org.embl.ebi.escience.scuflworkers.wsdl
 

Subclasses of Processor in org.embl.ebi.escience.scuflworkers.wsdl
 class WSDLBasedProcessor
          A processor based on an operation defined within a WSDL file accessible to the class at construction time.
 

Methods in org.embl.ebi.escience.scuflworkers.wsdl that return Processor
 Processor WSDLXMLHandler.loadProcessorFromXML(org.jdom.Element processorNode, ScuflModel model, java.lang.String name)
           
 

Methods in org.embl.ebi.escience.scuflworkers.wsdl with parameters of type Processor
 org.jdom.Element WSDLXMLHandler.elementForProcessor(Processor p)
           
 

Method parameters in org.embl.ebi.escience.scuflworkers.wsdl with type arguments of type Processor
 java.lang.String WSDLBasedProcessor.getHTMLSummary(java.util.List<HTMLSummarisableProcessor> processors, java.util.Map<java.lang.String,Processor> names)
           
 

Constructors in org.embl.ebi.escience.scuflworkers.wsdl with parameters of type Processor
WSDLInvocationTask(Processor p)
           
 

Uses of Processor in uk.ac.soton.itinnovation.taverna.enactor.entities
 

Methods in uk.ac.soton.itinnovation.taverna.enactor.entities that return Processor
 Processor ProcessorTask.getProcessor()
          Retrieves the XScufl Processor object for this task
 

Constructors in uk.ac.soton.itinnovation.taverna.enactor.entities with parameters of type Processor
ProcessorTask(java.lang.String id, uk.ac.soton.itinnovation.freefluo.core.flow.Flow flow, Processor p, uk.ac.soton.itinnovation.freefluo.task.LogLevel l, java.lang.String userID, java.lang.String userCtx)