Package net.sourceforge.taverna.scuflworkers.biojava

Provides BioJava-based LocalWorkers capable of sequence transcription, translation, and file parsing.

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          Description

Class Summary
BlastParserWorker This processor parses BLAST results and returns an XML document containing the results.
BlastParserWorkerTest This class Last edited by $Author: sowen70 $
EMBLParserWorker This processor parses an EMBL-based file and outputs the results in Agave XML format.
EMBLParserWorkerTest This class tests the EMBLParserWorker by parsing a test file.
FastaWorker This processor reads a FASTA file and returns the results as XML.
FileFormatIDWorker This class Last edited by $Author: sowen70 $
FileFormatIDWorkerTest This class Last edited by $Author: sowen70 $
GenBankParserWorker This class parses genbank files and outputs the results in Agave XML format.
GenBankParserWorkerTest This class tests the GenBanParserWorker by parsing a GenBank test file.
ReverseCompWorker This processor takes a raw DNA sequence and returns the reverse complement of the sequence.
ReverseCompWorkerTest This class Last edited by $Author: sowen70 $
SwissProtParserWorker This processor parses a SwissProt file and outputs the results in Agave XML format.
SwissProtParserWorkerTest This class tests the SwissProtParserWorker by parsing a SwissProt test file.
TranscribeWorker This processor takes a DNA sequence and transcribes it into an RNA sequence.
TranscribeWorkerTest This class Last edited by $Author: sowen70 $
TranslateWorker This class translates a DNA sequence into a protein sequence.
TranslateWorkerTest This class Last edited by $Author: sowen70 $
 

Package net.sourceforge.taverna.scuflworkers.biojava Description

Provides BioJava-based LocalWorkers capable of sequence transcription, translation, and file parsing.